Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs142519821 chr16:89816745 G/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs142614596 chr13:54171029 C/T 0.000228 177 25.77 20.17 3.17 KM Plot
PCPG rs142660665 chr2:217040873 ACT/A 6.21E-6 174 25 28.87 2.93 KM Plot
PCPG rs142663719 chr10:29842282 C/T 3.99E-11 178 25.53 22.05 10.3 KM Plot
PCPG rs1427339 chr2:108588292 A/G 0 177 25.27 25.53 3.17 KM Plot
PCPG rs142820951 chr2:24322312 G/A 0.000122 175 25.4 27.52 17.43 KM Plot
PCPG rs142837313 chr12:56725981 GA/G 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs142930522 chr2:118537403 A/T 1.67E-5 177 24.85 30.33 11.65 KM Plot
PCPG rs143007965 chr7:105164594 T/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs143071966 chr7:105154879 A/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs143092267 chr2:24321753 A/G 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs143096157 chr7:158872536 G/A 0 175 25.4 41.8 3.17 KM Plot
PCPG rs143106090 chr16:89906800 G/A 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs143327743 chr7:105161012 T/C 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs143329043 chr7:36161644 C/T 0.000461 176 25.87 24.23 14.37 KM Plot